Update: I picked the bike up from Bayou Honda, stopped by the gas station and gassed it up on the trailer. It took about 4 gal to fill, so I had gas. When I gassed up the bike, I noticed that someone had taken the gas cap off - it was jus sitting there loose under the compartment door. When I got home, I charged the battery and the bike started fine. Will the gas cap off cause the bike not to start?
My next step is to order the slave cylinder for the clutch, and change it out.
I can't say enough about Bayou Honda though. Charged me $50 to put an estimate together that covered replacing anything that could possibly be related to a bike not starting without even trying to start the bike themselves. Nice troubleshooting technique. I call that the shotgun approach. Nice people to shoot the bull with, but I won't recommend them to anyone for repair troubleshooting.