imported post
Cruise "ON" indicator with the key on showing good BAS (and also kill switch)...
... and you're getting no spark as you crank? Are you looking for spark with a timing (lamp or how)?
I hope that you're not trying to start in gear with the sidestand down (guess why I'm asking, yep, BTDT

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If you swapped the coils, then you've already been at the white 4-pin connector taped into the harness (right side of bike about "knee height) under the inner fairing panel. At that connector, look for 12V at the dark wire (Black with a light colored stripe with the key in "RUN"... (this is the 12V for all 3 of the coils)
While you're in that connector, watch each of the yellow wires (each will have it's own dark stripe) one at a time for a switched ground as you crank the bike. These switched grounds are the OUTPUT of the ignition module and should be what's firing your coils. (I'm thinking that you may not have signal there...)
As long as you've got eh side panel off, doublecheck and clean the connectors for the ignition box there hangin off the gas filler overflow tray...
You can measure for resistance of the pulse generators (I'd suspect a faulty connector) right at the harness connector there --- Look for a Green wire with a black stripe (common ground for all the sensors). The Pulse generators (timing INPUT) will be on white wires; find 2 white wires in that connector each of the white wires will have a color stripe (one yellow and the other blue, I think-- NOT the red stripe- that's from the gear switch). Resistance between each of the wires an their common ground should NOT exceed 500 ohms (I think 300 is ideal?).
These wires will run up to a connector above the right radiator fan. If you look at the connectors, they are all neatly arranged and ONE connector is kinda "sideways" and "above" the others... That's the connector for the pulse generators, and you may have shaken it loose (it gets quite dirty up there; worth a cleaning if you've got things apart anyway

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edited typos as an amusement:gunhead: