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I had the same problem after rebuilding my GL1000 carbs. It went away after carefully balancing the carbs.
Other than that, it could be that compression is low or not the same on all cylinders. Since you just got it running, and it hasn't been on the roadverly long, run the crap out of it tohelp re-seat the rings. You might also want to run the engine for ten minutes with some of that kerosene-type motor flush stuff, then change the oil.
I had the same problem after rebuilding my GL1000 carbs. It went away after carefully balancing the carbs.
Other than that, it could be that compression is low or not the same on all cylinders. Since you just got it running, and it hasn't been on the roadverly long, run the crap out of it tohelp re-seat the rings. You might also want to run the engine for ten minutes with some of that kerosene-type motor flush stuff, then change the oil.